Background University of Maryland, BS, 2017
Chemical Engineering
Current Research
Publications
Shinder, I., Hu, R., Ji, H.J. et al. EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes. Nat Commun 14, 7223 (2023). https://doi.org/10.1038/s41467-023-43017-4
https://rdcu.be/dtq27
Varabyou, A., Sommer, M. J., Erdogdu, B., Shinder, I., Minkin, I., Chao, K. H., Park, S., Hein, J., Pockrand, C., Shumate, A., Rincon, N., Puiu, S., Steinegger, M., Salzberg, S. L., & Pertea, M. (2023). CHESS 3: An improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure. Genome Biology, 24, 249.
https://doi.org/10.1186/s13059-023-03088-4
Avigdor, B. E., Yang, K., Shinder, I., Orsburn, B. C., Rais, R., Kano, S. I., Sawa, A., & Pevsner, J. (2021). Characterization of antipsychotic medications, amino acid signatures, and platelet-activating factor in first-episode psychosis. Biomarkers in Neuropsychiatry, 5, 100045.
https://doi.org/10.1016/j.bionps.2021.100045
Zimin, A. V., Shumate, A., Shinder, I., Heinz, J., Puiu, D., Pertea, M., & Salzberg, S. L. (2022). A reference-quality, fully annotated genome from a Puerto Rican individual. Genetics, 220(2), iyab227.
https://doi.org/10.1093/genetics/iyab227